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Cheap Flights from Manila to Tokyo

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Compare Manila Ninoy Aquino to Tokyo flight deals

Find the cheapest month or even day of the year to fly to Tokyo

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Flight deals from Manila Ninoy Aquino to Tokyo

Looking for a cheap last-minute deal or the best return flight from Manila Ninoy Aquino to Tokyo? Find the lowest prices on one-way and return tickets right here.
Tokyo.$224 per passenger.Departing Sun, 15 Jun, returning Fri, 20 Jun.Return flight with Jetstar Japan.Outbound direct flight with Jetstar Japan departs from Manila Ninoy Aquino on Sun, 15 Jun, arriving in Tokyo Narita.Inbound direct flight with Jetstar Japan departs from Tokyo Narita on Fri, 20 Jun, arriving in Manila Ninoy Aquino.Price includes taxes and charges.From $224, select.
Tokyo.$224 per passenger.Departing Wed, 10 Sep, returning Sun, 14 Sep.Return flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Wed, 10 Sep, arriving in Tokyo Narita.Inbound direct flight with Philippines AirAsia departs from Tokyo Narita on Sun, 14 Sep, arriving in Manila Ninoy Aquino.Price includes taxes and charges.From $224, select.
Tokyo.$225 per passenger.Departing Sat, 28 Jun, returning Wed, 2 Jul.Return flight with Jetstar Japan.Outbound direct flight with Jetstar Japan departs from Manila Ninoy Aquino on Sat, 28 Jun, arriving in Tokyo Narita.Inbound direct flight with Jetstar Japan departs from Tokyo Narita on Wed, 2 Jul, arriving in Manila Ninoy Aquino.Price includes taxes and charges.From $225, select.
Tokyo.$228 per passenger.Departing Mon, 2 Jun, returning Fri, 5 Sep.Return flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Mon, 2 Jun, arriving in Tokyo Narita.Inbound direct flight with Philippines AirAsia departs from Tokyo Narita on Fri, 5 Sep, arriving in Manila Ninoy Aquino.Price includes taxes and charges.From $228, select.
Tokyo.$229 per passenger.Departing Fri, 4 Jul, returning Mon, 7 Jul.Return flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Fri, 4 Jul, arriving in Tokyo Narita.Inbound direct flight with Philippines AirAsia departs from Tokyo Narita on Mon, 7 Jul, arriving in Manila Ninoy Aquino.Price includes taxes and charges.From $229, select.
Tokyo.$231 per passenger.Departing Thu, 24 Apr, returning Mon, 19 May.Return flight with Jetstar Japan.Outbound direct flight with Jetstar Japan departs from Manila Ninoy Aquino on Thu, 24 Apr, arriving in Tokyo Narita.Inbound direct flight with Jetstar Japan departs from Tokyo Narita on Mon, 19 May, arriving in Manila Ninoy Aquino.Price includes taxes and charges.From $231, select.
Tokyo.$237 per passenger.Departing Tue, 11 Nov, returning Tue, 18 Nov.Return flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Tue, 11 Nov, arriving in Tokyo Narita.Inbound direct flight with Philippines AirAsia departs from Tokyo Narita on Tue, 18 Nov, arriving in Manila Ninoy Aquino.Price includes taxes and charges.From $237, select.
Tokyo.$238 per passenger.Departing Sat, 27 Sep, returning Wed, 1 Oct.Return flight with Philippines AirAsia.Outbound direct flight with Philippines AirAsia departs from Manila Ninoy Aquino on Sat, 27 Sep, arriving in Tokyo Narita.Inbound direct flight with Philippines AirAsia departs from Tokyo Narita on Wed, 1 Oct, arriving in Manila Ninoy Aquino.Price includes taxes and charges.From $238, select.

Find the cheapest month to fly from Manila Ninoy Aquino to Tokyo

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Manila Ninoy Aquino to Tokyo flights are currently cheapest in June.
Apr
from $333
May
from $248
Jun
from $224
Jul
from $229
Aug
from $251
Sep
from $224
Oct
from $249
Nov
from $237
Dec
from $246
Jan
from $296
Feb
from $290
Mar
from $306

Direct flights from Manila Ninoy Aquino to Tokyo

Alternative Manila Ninoy Aquino to Tokyo routes

Looking for the cheapest, fastest or easiest route from Manila Ninoy Aquino to Tokyo? You could fly into the following airports instead.

Manila to Tokyo: Flight information

The things to know before you go.
Cheapest flight found$224
Cheapest month to flySeptember
Average flight time4 hrs, 25 mins
Most popular airlineANA (All Nippon Airways)
Average flights per week296

Finding cheap flights from Manila Ninoy Aquino to Tokyo: Frequently asked questions

There are 3 airports in Tokyo: Tokyo Haneda, Tokyo Narita and Omitama.
The best price we found for a return flight from Manila Ninoy Aquino to Tokyo is $224. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
4 hours and 25 minutes is the average flight time from Manila Ninoy Aquino to Tokyo.
ANA (All Nippon Airways), Philippine Airlines and American Airlines fly direct from Manila Ninoy Aquino to Tokyo.
As of April 2025, there are 268 flights per week flying from Manila Ninoy Aquino to Tokyo.
The cheapest month to fly from Manila Ninoy Aquino to Tokyo is usually April 2025.
If you're flying from Manila Ninoy Aquino Airport, the cheapest airport near Tokyo is Tokyo Narita – which is 63.7 km away from the centre of Tokyo. We've found flights into this airport from $224.
After crunching the numbers on our flight calendar, we found that it's currently cheapest to fly from Manila Ninoy Aquino Airport to Tokyo on Wednesday, 10 September 2025.
Yes – the average flight time is 4 hours and 25 minutes.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to Tokyo but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.
We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to Tokyo is around 40 days in advance, so don’t leave your flight to the last minute.
In April, the average temperature is usually around 19°C. August is typically the warmest month in Tokyo, when it usually averages around 28°C. You can expect the least rain in February. The coldest month is February, with temperatures averaging 15°C. The rainiest month is May.
Currently, Philippines AirAsia offers the cheapest flight tickets to Tokyo.

Travelling from Ninoy Aquino International Airport (MNL) to Tokyo: what you need to know

  • Book a direct flight from Ninoy Aquino International Airport to Tokyo and you'll be in the air for around 4 hours 46 minutes.

  • Ninoy Aquino International Airport is located in Manila. Operating on the UTC+9 timezone, Tokyo is 1 hour ahead of Manila.

  • Ninoy Aquino International Airport (MNL) to Narita International Airport (NRT) is the most popular route, with 86 weekly departures to pick from. If you have things to finalize before heading off, the last flight from MNL to NRT is with Philippines AirAsia at 15:30. Go for the first departure operated by Jetstar Japan at 00:40 if you want to fly out earlier.

  • For hassle-free travel, arrive at the airport two hours ahead of international flights and one hour before domestic departures. This will give you plenty of time to catch your flight from MNL to Tokyo.

  • You'll likely experience longer lines during popular months such as July and other peak seasons. Arriving up to four hours in advance for an international flight and two hours for domestic departures is a good idea.

  • You can book a direct flight from Ninoy Aquino International Airport to Tokyo. Start your trip at MNL and land at Haneda Airport (HND).

  • These are some of the leading airlines offering direct flights from Ninoy Aquino International Airport to Tokyo:

  • We make it a cinch to find a flight from MNL to Tokyo with a stopover. To see your options, deselect 'Direct flights only.' Then, simply select a flight with a stop long enough to see the sights of your chosen city. Top stopovers include:

    • Kaohsiung International Airport (KHH)

    • Taiwan Taoyuan International Airport (TPE)

    • Kansai International Airport (KIX)

  • To travel to Japan for tourism purposes, you will need an embassy visa if you have a passport from Philippines. However, visa rules are subject to change and you may need other documents depending on the duration and purpose of your trip. Always check the most recent guidelines before you book your cheap ticket from Ninoy Aquino International Airport to Tokyo.

  • The journey from central Manila to MNL takes about 1 hour and 16 minutes by public transport. If you ride-share, drive or take a cab, you'll cover the 13 kilometres in 34 minutes or so, depending on traffic conditions.

  • Searching for a convenient hotel close to MNL? If you've booked an early flight from Ninoy Aquino International Airport to Tokyo, these accommodation options will put you moments from your departure gate:

How to find the cheapest flights from Ninoy Aquino International Airport (MNL) to Tokyo

  • $99 is the lowest price for a one-way ticket from Ninoy Aquino International Airport to Tokyo. Return flights start at $224. These prices may change based on demand.

  • Book 11 months before your departure date. After looking at the numbers on our calendar, this is how far you'll want to book ahead to secure cheap tickets from MNL to Tokyo.

  • July is the cheapest month for tickets from Ninoy Aquino International Airport to Tokyo. If you'd like to travel at a different time of year, the 'Whole month' tool will show you the lowest prices across every month.

  • Create a Price Alert for flight tickets from MNL to Tokyo. You don't need to check every day to see whether prices have dropped. We'll tell you the moment the price changes.

  • Tailor your flights with filters. Pick your departure and arrival times, total journey duration and airlines. You can also sort the results by 'Fastest,' 'Cheapest' or 'Best' flights from Ninoy Aquino International Airport to Tokyo.

Airports in Tokyo

Haneda Airport (HND)

Narita International Airport (NRT)

  • Narita International Airport (NRT) is about 64 kilometres from the centre of Tokyo. Following your flight from Ninoy Aquino International Airport to Tokyo, it'll take you around 58 minutes to get to the heart of the city in a cab or ride-share.

  • You'll find some great places to call home for the night near NRT. Unwind and get cosy after your flight from MNL to Tokyo at one of these well-located options:

Best time to go to Tokyo

  • June is the busiest month for flights from Ninoy Aquino International Airport to Tokyo. To escape the crowds, travel to Tokyo in February when things are quieter.

  • Before booking a flight from Ninoy Aquino International Airport to Tokyo, think about the type of weather you enjoy. August is the warmest month in Tokyo, with the temperature ranging from 26ºC to 29ºC.

  • February sees average temperatures of between 15ºC and 20ºC. Search for cheap flights from MNL to Tokyo sometime around then if you'd rather travel in cooler conditions.

More about Tokyo

  • Start your Tokyo trip right by choosing the perfect place to stay. After booking your flight from Ninoy Aquino International Airport to Tokyo, browse our range of hotels including:

  • Tokyo Tower and Senso-ji Temple Yogodo are just a couple of the leading attractions to put on your Tokyo travel itinerary. Keep the adventure rolling by checking out Mag's Park Rooftop Shibuya Crossing.

Complete your Tokyo trip with a car rental

  • We use the same magic that helped you find your cheap flight from Ninoy Aquino International Airport to Tokyo to track down amazing deals on car rentals. Search for your ride in seconds and easily compare your options. Plus we give you all the info you need to know about car rentals in Tokyo, from the most popular rental company to the best time to book.

Plan the rest of your trip from Manila to Tokyo

Prices shown on this page are estimated lowest prices only. Found in the last 45 days.